Yes you just hit the F12 key as you boot up with your Ubuntu CD in the
drive. It will show you a choice of drives to boot from. tick the CD
drive. Ubuntu will offer to load the system into memory of install it.
choose install. Follow on screen requests till you get to the options
to use HDs. Here you choose the whole drive option and click the brown
bar that will show you two drives. Select the second slave drive and go.

The install will then format the second drive and install.