You may get a few replies. When you say programing your radio there are a
couple of questions to ask. Do you mean control you rig? Do you mean add
frequencies to memories?
If you mean control the rig then you can use FLDIGI to do that,
depending on
rig type. FLDIGI has a host of companion prpgrams to use with it, and
there is a
web site which will show up if you enter that name in a search engin
like Google.
I use FLDIGI and like it and there is a version that works on Windows
too, so you
could have the same feel in you software if you switch between Linux and
Windows.

There are some other Linux programs to use for rig control but not too many.
If you want something in Linux to manage memories on ham rigs I haven't
found
any yet.
I haven't found that Wine works with HRD I don't know about any
manufacturers
software, it would depend on what windows tools they inbed in the software.
I have thoughtabout trying a Virtual Box windows installation but
haven't yet.